Scientific Projects

Here are some projects I’ve actively participated in so far (in roughly inverse chronological order). As you can see, most of my works can be categorized into biophysics, medical physics, and computational biology.
 

Biophysics

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Contour analysis: cell membrane edge detection 		cam_mr1.jpg
Microrheology: video particle tracking of microspheres embedded in colloidal mixtures

Medical physics

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Development of a treatment planning system (TPS) and research on dose calculation algorithm 		corefusion.jpg
Development of an image registration system and implementation of efficient numerical optimization method 		model.jpg
Automated beam modeling algorithm for clinical linear accelerators (LINACs)
imrt.jpg
Implementation of Intensity-Modulated Radiation Therapy (IMRT) algorithm 		voi.jpg
Implementation of VTK-based three-dimensional medical image
visualization module 		rms.jpg
Development of a radiation therapy control system for large and complex oncology departments

Protein folding and high performance computing

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“SegaPred, A Self-Evolutionary Genetic Algorithm Based Protein Conformation Predicting Program” 		mpi.jpg
Parallel programming with MPI and its application to SegaPred

Drug discovery and machine learning

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Eigenmode analysis of enzyme carbon backbones around the active sites 		screen.jpg
Drug candidate screening and effective descriptors for Support Vector
Machines (SVM) 		solv_acc.jpg
“Enzyme Active Site Recognition Using Support Vector Machines”

 

Biology

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Efficient estimation of the rice plant’s susceptibility to cold weather using hydrogen peroxide 		sd.jpg
Absorption of heavy metal ions with the mucus of purple bacteria

Miscellaneous

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A cheap yet effective steam humidifier made of an old rice cooker 		tcore.jpg
Transformation of a transformer

See also